rs28249618 SNP Detail

Summary

• ID
  rs28249618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153387764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGTAAGGA GTGTGGCTAA CTGCCTGGGC CTTGAGTTCA
  TAATGTTCTT TTCCCTTTCT GTCCACCATC CCCCTGGCAG CCTGAGTTTC TTGTGTTGAT
  R
  CTGATGCCCT GAGCTCCCTT GAACTCCAAA GCCTATTTCT TCAAGTTGCT CCGTGCCTCT
  TCAACTTTGC CATGCTCCCT TCTGCACCTG CCAAGTCTCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37559645	NES08907580	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs28249618					SNP	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559645	NES08907580	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153387764 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	1392 bp upstream
Gm75218	predicted gene, 75218	1182 bp downstream
Rr567675	regulatory region 567675	1563 bp distal
Rr567676	regulatory region 567676	724 bp distal
Rr567677	regulatory region 567677	902 bp proximal
Rr567678	regulatory region 567678	1403 bp proximal