rs28249617 SNP Detail

Summary

• ID
  rs28249617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153387810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGACCC TGGGCAGAAG
  AATTGACATC TCTGGGCTGC GGGGTTTGGC CTATGAAGTA AGGAGTGTGG CTAACTGCCT
  GGGCCTTGAG TTCATAATGT TCTTTTCCCT TTCTGTCCAC CATCCCCCTG GCAGCCTGAG
  TTTCTTGTGT TGATACTGAT GCCCTGAGCT CCCTTGAACT CCAAAGCCTA TTTCTTCAAG
  Y
  TGCTCCGTGC CTCTTCAACT TTGCCATGCT CCCTTCTGCA CCTGCCAAGT CTCCCCTGGG
  CACTTGCAGG ACCCCCTCAG ACATCAGATT GATCACTCAT TCCATTTTAG GCACAATATT
  GGTGGCTAGT CCTTTCTGAG AGCACAGTGC CTTCTGCCCT GTGTTTGGCC CATTATGAAA
  CCTGTGGCCT GCTAGCAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559644	NES08907581	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T	C	C	T	T	C	C	T	C	T
ss147996091	ENSMUSSNP402359	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249617					SNP	T	T	C	T	T	C	T	C	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559644	NES08907581	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153387810 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	1346 bp upstream
Gm75218	predicted gene, 75218	1228 bp downstream
Rr567675	regulatory region 567675	1609 bp distal
Rr567676	regulatory region 567676	770 bp distal
Rr567677	regulatory region 567677	856 bp proximal
Rr567678	regulatory region 567678	1357 bp proximal