rs28249616 SNP Detail

Summary

• ID
  rs28249616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153387910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTCCCT TTCTGTCCAC
  CATCCCCCTG GCAGCCTGAG TTTCTTGTGT TGATACTGAT GCCCTGAGCT CCCTTGAACT
  CCAAAGCCTA TTTCTTCAAG TTGCTCCGTG CCTCTTCAAC TTTGCCATGC TCCCTTCTGC
  ACCTGCCAAG TCTCCCCTGG GCACTTGCAG GACCCCCTCA GACATCAGAT TGATCACTCA
  Y
  TCCATTTTAG GCACAATATT GGTGGCTAGT CCTTTCTGAG AGCACAGTGC CTTCTGCCCT
  GTGTTTGGCC CATTATGAAA CCTGTGGCCT GCTAGCAAGT GCCTAGGGCC AAGGCCATTT
  GTCAAGTGCT GATTTGTCTC TCAGAGTAGT GTCACCACCA TCCCTCATAT CACCCACGGG
  CCAGCTCTGG TTCCCTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559643	NES08907584	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T	C	C	T	T	C	C	T	C	T
ss147996097	ENSMUSSNP2505561	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249616					SNP	T	T	C	T	T	C	T	C	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559643	NES08907584	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153387910 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	1246 bp upstream
Gm75218	predicted gene, 75218	1328 bp downstream
Rr567675	regulatory region 567675	1709 bp distal
Rr567676	regulatory region 567676	870 bp distal
Rr567677	regulatory region 567677	756 bp proximal
Rr567678	regulatory region 567678	1257 bp proximal