rs28249613 SNP Detail

Summary

• ID
  rs28249613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153388042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTGCAC CTGCCAAGTC
  TCCCCTGGGC ACTTGCAGGA CCCCCTCAGA CATCAGATTG ATCACTCATT CCATTTTAGG
  CACAATATTG GTGGCTAGTC CTTTCTGAGA GCACAGTGCC TTCTGCCCTG TGTTTGGCCC
  ATTATGAAAC CTGTGGCCTG CTAGCAAGTG CCTAGGGCCA AGGCCATTTG TCAAGTGCTG
  R
  TTTGTCTCTC AGAGTAGTGT CACCACCATC CCTCATATCA CCCACGGGCC AGCTCTGGTT
  CCCTGAAGCA TCTCTCGGTC TCCCGCCTTC CACTTGGCCT TGCCCTCTGT ACTCTATGGC
  GCTGGTGTCT TCAGGACGAT GTTCCCAGTC AGAGTAGCAC GGAACCCTTT CCTTCTGGCT
  GTTTCTGTAC CCCCATGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559640	NES08907594	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G	A	G	G	A	A	G	G	A	G	A
ss147996112	ENSMUSSNP376225	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249613					SNP	A	A	G	A	A	G	A	G	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559640	NES08907594	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153388042 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	1114 bp upstream
Gm75218	predicted gene, 75218	1460 bp downstream
Rr567675	regulatory region 567675	1841 bp distal
Rr567676	regulatory region 567676	1002 bp distal
Rr567677	regulatory region 567677	624 bp proximal
Rr567678	regulatory region 567678	1125 bp proximal