rs28249612 SNP Detail

Summary

• ID
  rs28249612
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153388163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCCTGT GTTTGGCCCA
  TTATGAAACC TGTGGCCTGC TAGCAAGTGC CTAGGGCCAA GGCCATTTGT CAAGTGCTGA
  TTTGTCTCTC AGAGTAGTGT CACCACCATC CCTCATATCA CCCACGGGCC AGCTCTGGTT
  CCCTGAAGCA TCTCTCGGTC TCCCGCCTTC CACTTGGCCT TGCCCTCTGT ACTCTATGGC
  S
  CTGGTGTCTT CAGGACGATG TTCCCAGTCA GAGTAGCACG GAACCCTTTC CTTCTGGCTG
  TTTCTGTACC CCCATGAGGA GGAGCCGTCT CTCTAACAGG TGCTACTTGC CTAGGCTCAG
  CCTCAGCCTA CCATCACTGT GGTGTGTGTG GGTCCAGCCC AAGAGCTCCT GGGTCAGCAT
  GAGATCCTGT AACAGCCCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559639	NES08907595	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	C	G		C	C	G	G	C	C	G	C	G
ss45353902	mCV25321333	ABI	CRAMUS_MOUSE	f	SNP		C					G		C
ss147996127	ENSMUSSNP2429128	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249612					SNP	G	C	G	G	C	G	G	C	C	G	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559639	NES08907595	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153388163 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	993 bp upstream
Gm75218	predicted gene, 75218	1581 bp downstream
Rr567675	regulatory region 567675	1962 bp distal
Rr567676	regulatory region 567676	1123 bp distal
Rr567677	regulatory region 567677	503 bp proximal
Rr567678	regulatory region 567678	1004 bp proximal
Rr567679	regulatory region 567679	1916 bp proximal