rs28249611 SNP Detail

Summary

• ID
  rs28249611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153388202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCAAGTG CCTAGGGCCA
  AGGCCATTTG TCAAGTGCTG ATTTGTCTCT CAGAGTAGTG TCACCACCAT CCCTCATATC
  ACCCACGGGC CAGCTCTGGT TCCCTGAAGC ATCTCTCGGT CTCCCGCCTT CCACTTGGCC
  TTGCCCTCTG TACTCTATGG CGCTGGTGTC TTCAGGACGA TGTTCCCAGT CAGAGTAGCA
  Y
  GGAACCCTTT CCTTCTGGCT GTTTCTGTAC CCCCATGAGG AGGAGCCGTC TCTCTAACAG
  GTGCTACTTG CCTAGGCTCA GCCTCAGCCT ACCATCACTG TGGTGTGTGT GGGTCCAGCC
  CAAGAGCTCC TGGGTCAGCA TGAGATCCTG TAACAGCCCT AATTCACAGC AAAAGCCATC
  TTAGACTCTC TATGTGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559638	NES08907596	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	C		T	T	C	C	T	T	C	T	C
ss45368576	mCV25321332	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss147996133	ENSMUSSNP5884172	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249611					SNP	C	T	C	C	T	C	C	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559638	NES08907596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153388202 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	954 bp upstream
Gm75218	predicted gene, 75218	1620 bp downstream
Rr567676	regulatory region 567676	1162 bp distal
Rr567677	regulatory region 567677	464 bp proximal
Rr567678	regulatory region 567678	965 bp proximal
Rr567679	regulatory region 567679	1877 bp proximal