rs28249610 SNP Detail

Summary

• ID
  rs28249610
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153388935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCTAGGCAG AGGAAATCCT GGTTAAAGAG AGGAGTGAAG TCCTCGCCCT CACAGGAGAG
  AAGACACAAC AAACAGCAGG TACTTGAGTG TTAAGCAGAG TGATCACAGA CTCTCCCCAA
  GGAAGCGGCA TGGCAGAGGC CCAGCGACTT GTTCAAGAGA GGAATGTTCT AGTACAACAG
  GCAATAAATA GGTGCAAAGA CCCTGCCGCC TGGCCCATCC TGGATGAAGC AGAAAGCAGG
  GAGAGTGGTG GGAAGCGAGC CACTCCATGG AGGACAGAGT GAGCAGGTGA GCAGAGTCAA
  K
  GTGGAAAGAA GACAGAGCCT CCCCCCCCCC CCCAAGAGTA AACTGAGGCT AACGGAAGCT
  AAGTACCCAT AAAACAAGGA AGTGTCAGAT GTCGGGTCAA ACCTGGAGCC AGAGACTCAA
  GGCTTCTCTC TGCAGGGGGC CCCATGACTC TGCTCATTAA TAGCTAACCA GGGTGGGGCC
  CTGCTGAGCT AAGAAGGGGC TGAGCCCTGA ACTTTTGGGG CCAAGCCCAA TAACAAGTGA
  GGGGATGACC TCCTCCTCTT GCATGATACC ATCTTGTCCC CTTGAGCAGG GCCATCGCTG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559637	NES08907553	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	T	G		G	T	G	G	T	T	G	T	G
ss45310218	mCV25321101	ABI	CRAMUS_MOUSE	f	SNP		T					G		T
ss147996147	ENSMUSSNP2943653	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249610					SNP	G	T	G	G	T	G	G	G	T	G	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559637	NES08907553	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153388935 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	221 bp upstream
Rr567676	regulatory region 567676	1895 bp distal
Rr567677	regulatory region 567677	within coordinates
Rr567678	regulatory region 567678	232 bp proximal
Rr567679	regulatory region 567679	1144 bp proximal