rs28249604 SNP Detail

Summary

• ID
  rs28249604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153390411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTACACTT GAAGGGGATG
  GCTGGATAAT TATGGCAGTG CCGCCGAGTG AGGGAGCTGA TGCCCGGAAT TGGCTCGGAC
  CCTTGCCCAC ACGGTGCAGC AGTAGCCTTG GGTAGATACT CTGGGCCATG GAGGAGTCAG
  AGAGAACCTC GTGGCCTTTG CACAATGAGC AGGCCTGGCT ACAAGGGCCC TGGGGAAACC
  R
  TGAGCTGGAT AGACGCTGGT GGCCTTGGGC ACCAGAGTGT GGGCAGCCAG CCTGCTGGCG
  TGGGGGAGGA GAACTCTGAT AATTCCCTTG TGTTTCTGTG TGTCCTCCCC CTGGGGAGAA
  ATCCTGCATT CTGTTCCTGG TCCCGCAAGT TCCTTGGAGC CCAGGGATAG CAAATGTGGA
  CCGCCTCCAT CCTGGTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559631	NES08907459	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249604					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559631	NES08907459	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153390411 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	within coordinates
Rr567677	regulatory region 567677	1245 bp distal
Rr567678	regulatory region 567678	528 bp distal
Rr567679	regulatory region 567679	within coordinates
Rr567680	regulatory region 567680	813 bp proximal
Tssr26914	transcription start site region 26914	1426 bp downstream