rs28249601 SNP Detail

Summary

• ID
  rs28249601
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153391036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACACTGCCC CCTCCTCCTG GTGATTTCTC TCTTCTCCTC
  CCACCTGCCT CCCTCACCGA CCGACCGATC AGTCACCACA GAGCTAGGCA CAAGCCAAGC
  M
  ATCTTTTGTG CATCCTCTCT GTGTAGCTGC AAGGAGGGGC CTACAGGACC GGCTGCCTTC
  AGTCTTTCTC ACCACTTTGG CAGAGAGATT CTAGAGACC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559628	NES08907462	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	C	A		C	C	A	A	C	C	A	C	A
ss45344362	mCV25321078	ABI	CRAMUS_MOUSE	f	SNP		A	C					A		C
ss147996178	ENSMUSSNP18998	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249601					SNP	A	A	C	A	A	C	A	A	C	C	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559628	NES08907462	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153391036 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	within coordinates
Rr567677	regulatory region 567677	1870 bp distal
Rr567678	regulatory region 567678	1153 bp distal
Rr567679	regulatory region 567679	246 bp distal
Rr567680	regulatory region 567680	188 bp proximal
Tssr26914	transcription start site region 26914	801 bp downstream