rs28249538 SNP Detail

Summary

• ID
  rs28249538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153418334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAGGGGAT CCGACACCTT ATCTGACTTC TGCAGGCACC
  TGCACACACA TGGTACATAT ACAACACACA CATACACACA CACACATACA CACACACACA
  Y
  TCTCGAGTGC ATGAATGAGG AGGTGGAGGA GGGAGGAACA GAGACAGAGA GACACACATA
  CTCAAAAAGA AATCTTTAAA GCCAGGTGCA CTAGCCCATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559563	NES08906648	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	C	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249538					SNP	T	T	T	C	T	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559563	NES08906648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153418334 () rs orientation: forward

Symbol	Name	Function Class
Rr567686	regulatory region 567686	within coordinates
Rr567687	regulatory region 567687	646 bp proximal
Rr567688	regulatory region 567688	1291 bp proximal