rs28249534 SNP Detail

Summary

• ID
  rs28249534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153419404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGT CTGGTTGAAG CACAAGCACG
  Y
  GTCAGACAGG AGCTGTGGCC TGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss37559559	NES08906634	PERLEGEN	MM_PANEL2	f	SNP			T	T	T		C		T
ss45272308	mCV23861251	ABI	CRAMUS_MOUSE	f	SNP	C		T			T
ss147997114	ENSMUSSNP6013331	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
ss320564188	CHEV_2_153403220	CHEVERUD	SCREENING_POP	f	SNP								T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs28249534					SNP	C	C	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559559	NES08906634	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153419404 () rs orientation: forward

Symbol	Name	Function Class
Rr567686	regulatory region 567686	991 bp distal
Rr567687	regulatory region 567687	within coordinates
Rr567688	regulatory region 567688	221 bp proximal