rs28246919 SNP Detail

Summary

• ID
  rs28246919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163550837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATAGTAAGAC CAGGCTTTGA ACTCTTGGCA GAGAAAACTG CCAATTCTCA CCCTGTACTC
  CTGTCCTGTG CTTCTCCACA GCCGTAGAAG TAAAGGACTT AGAGAAAGTA GCGCCCATTT
  TCTTTACTTT GGCAGCAGTC CTCCATGGGG ACTGTTTTTA CAGGTAAAGA ACCCACGACT
  CAGAGATGGT CTGTGCTTTG CTCCCTCGGC ATCATGTAAA GTGGAGCTCG TGACTCGGCT
  TCTTCCCCAC AGCCCCCCCC CCCCCACCTC CTCTCAGCAC CATCTTCTTG CAACCAGGGC
  R
  GAATCTACTG CCTTTTTTTC TCTTCTGCTT TCTAGTAATC CCAGGATTTG GGGGATTTCC
  ACCTCCCAGC CCCTCTGCTG AGACTCTTCT CTGCTTGCAG AGCCAGGGTC TCTAGTGGGA
  AGCCCCCATG AGAATAGAGC TCTCCTGCTT ATCATCCTGC ATACCCTGCC TGCCAGCTGC
  TTCCCAGGAC CCCAGGCTGT GTCCTCTTCT GACCCAGGGC CTCTGGGAAT CCCTAGATGC
  ATATTTACAG CGGCTTGGTT GCAACTGTTA GTTCCCAGAA TGTTTTTCCA CCCAACAAGT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37520645	NES08876755	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	A	A
ss45247149	mCV23586940	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss148209529	ENSMUSSNP3501066	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28246919					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520645	NES08876755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163550837 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	1863 bp proximal