rs28246917 SNP Detail

Summary

• ID
  rs28246917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163550997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCACCTC CTCTCAGCAC
  CATCTTCTTG CAACCAGGGC GGAATCTACT GCCTTTTTTT CTCTTCTGCT TTCTAGTAAT
  CCCAGGATTT GGGGGATTTC CACCTCCCAG CCCCTCTGCT GAGACTCTTC TCTGCTTGCA
  GAGCCAGGGT CTCTAGTGGG AAGCCCCCAT GAGAATAGAG CTCTCCTGCT TATCATCCTG
  Y
  ATACCCTGCC TGCCAGCTGC TTCCCAGGAC CCCAGGCTGT GTCCTCTTCT GACCCAGGGC
  CTCTGGGAAT CCCTAGATGC ATATTTACAG CGGCTTGGTT GCAACTGTTA GTTCCCAGAA
  TGTTTTTCCA CCCAACAAGT TTAAGAGGGT TAGCCTCTGC TCCAGCAGCT TTTAGAACAC
  TGAGGGCCTG AGCCCCGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37520643	NES08876757	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C	T	C	C	C	T	T
ss148209534	ENSMUSSNP6154089	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28246917					SNP	T	T	C	C	C	C	C	T	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520643	NES08876757	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163550997 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	1703 bp proximal