rs28246911 SNP Detail

Summary

• ID
  rs28246911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163551270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGATGCAT ATTTACAGCG
  GCTTGGTTGC AACTGTTAGT TCCCAGAATG TTTTTCCACC CAACAAGTTT AAGAGGGTTA
  GCCTCTGCTC CAGCAGCTTT TAGAACACTG AGGGCCTGAG CCCCGTGCAC CTTACACTGC
  TGAGCTTTGT GGGAAGAGCA AGGACACCAG GGTTCCTAGA GTCGTGGGCA CACCTTGATG
  Y
  TTACAGATAC ACATTTTCTT GGGATATGCC CATAGTTTTC TTTTTGCTAT GGCTCCTAGC
  TTCCAACACT TGTGACATTT TAAAGGTTTA TATATGATAT CCTGAAATAT TCCTAAACTC
  TTCCCCCTTA CCAGGTATAT AGAGTGTCAT GCCTCCCATC AGTAAAATGT CAACAAGGGC
  TACTGTTGTA CCAGTGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37520637	NES08876767	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28246911					SNP	C	T	T	T	T	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520637	NES08876767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163551270 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	1430 bp proximal