rs28246901 SNP Detail

Summary

• ID
  rs28246901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163552120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGACTA TAAGAGAGAT
  GATAATATCT TGTTTCTTTT CACCCTCCTC AGTGTATTTT GGGGTGACTT TGACAGGACT
  CTTAGAGGAG CTGGAGAAAA AACCTAAACC GGAAGCGACT CCTTTGTGCT AACTCTGCAG
  TGTTGCGTGA CACATCACCT CGATGCCCAC AAGTTCGGCA GCGGTAGTAA CTTACTTTCT
  Y
  GCTTGGCTGC TGCAGGCAGG ACTTGGGACA GTGTGCGTCT GGCACACATA GCTAGTGCCT
  GGAGTTGGAT TAACAAGGGG TGTGCAGGAG TCACTGACTG ACAGCTGCAT CGCCACCCAT
  GCAGCTCTGG CTTCTTCATG TGTTCACTTC CCAGAGTGTG GGTTCCTCAT GGTGTGGCAG
  CCTCTGGTTT CCTGTATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37520627	NES08876722	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	C	T	T
ss148209608	ENSMUSSNP1822961	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28246901					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520627	NES08876722	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163552120 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	580 bp proximal