rs28246900 SNP Detail

Summary

• ID
  rs28246900
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163552248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACTCTGC AGTGTTGCGT
  GACACATCAC CTCGATGCCC ACAAGTTCGG CAGCGGTAGT AACTTACTTT CTCGCTTGGC
  TGCTGCAGGC AGGACTTGGG ACAGTGTGCG TCTGGCACAC ATAGCTAGTG CCTGGAGTTG
  GATTAACAAG GGGTGTGCAG GAGTCACTGA CTGACAGCTG CATCGCCACC CATGCAGCTC
  K
  GGCTTCTTCA TGTGTTCACT TCCCAGAGTG TGGGTTCCTC ATGGTGTGGC AGCCTCTGGT
  TTCCTGTATT TCTTAACTGC TGGAGACAGG TATCCTAGGA GAGCCAGGTG GATGCTGTAT
  GAGGTCCCCT AACTTCATCC TAGAGTCAGA CACCATCCTT CATTTTACGT TAGACATCAG
  ATACTAGGGT ATGGCTCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ
ss37520626	NES08876723	PERLEGEN	MM_PANEL2	f	SNP		T	T	G		T
ss148209629	ENSMUSSNP1824858	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ
rs28246900					SNP	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520626	NES08876723	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163552248 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	452 bp proximal