rs28246898 SNP Detail

Summary

• ID
  rs28246898
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163552432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCCATG CAGCTCTGGC
  TTCTTCATGT GTTCACTTCC CAGAGTGTGG GTTCCTCATG GTGTGGCAGC CTCTGGTTTC
  CTGTATTTCT TAACTGCTGG AGACAGGTAT CCTAGGAGAG CCAGGTGGAT GCTGTATGAG
  GTCCCCTAAC TTCATCCTAG AGTCAGACAC CATCCTTCAT TTTACGTTAG ACATCAGATA
  S
  TAGGGTATGG CTCAGTGATA AATGGGAGGC CCTAAGCTGA ATCCCCAGCA CCTCCCAAAA
  ATGAAAGAGG AGGAAACGGA AGAAAAGGAA GAAAAGAAGT TCTAAAGCCA GCTCACAACG
  CATCCAAAAG GATTTAAATT AAGCCTCACA TCCCCTTCTG TATTTTCTTG ATGGTACTGA
  AACTTCAGCC CAGGACTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ	WSB/EiJ
ss37520624	NES08876725	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ	WSB/EiJ
rs28246898					SNP	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520624	NES08876725	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163552432 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	268 bp proximal
Rr569474	regulatory region 569474	1865 bp proximal