rs28246897 SNP Detail

Summary

• ID
  rs28246897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163552551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGTGGA TGCTGTATGA
  GGTCCCCTAA CTTCATCCTA GAGTCAGACA CCATCCTTCA TTTTACGTTA GACATCAGAT
  ACTAGGGTAT GGCTCAGTGA TAAATGGGAG GCCCTAAGCT GAATCCCCAG CACCTCCCAA
  AAATGAAAGA GGAGGAAACG GAAGAAAAGG AAGAAAAGAA GTTCTAAAGC CAGCTCACAA
  Y
  GCATCCAAAA GGATTTAAAT TAAGCCTCAC ATCCCCTTCT GTATTTTCTT GATGGTACTG
  AAACTTCAGC CCAGGACTGT GTTATGCTAG GCCAGTGGTT TGTCACCCAG TTACACTCCC
  AGCTTTTTAG ATGTCAGTGT GTTAGGCAGA GTGCCAAACA ACTTGTAGAT ACGTTGCAGA
  ATTACTACAG AGATAGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37520623	NES08876726	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C		C	C	C	T
ss148209654	ENSMUSSNP1350141	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs28246897					SNP	T	T	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520623	NES08876726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163552551 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	149 bp proximal
Rr569474	regulatory region 569474	1746 bp proximal