rs28246894 SNP Detail

Summary

• ID
  rs28246894
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163553049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGACCTT GGCAAGCCTG
  CCTGGAAGTG ATTTCACTTT CCCTTCCTGC CCCTCCCTCC ATAGGAGAGG GAGGCTGCCC
  CTTTCTGGAA GTTCTGCTTC GAAGCTGAGC CCCCAACTAA GCTTAGAAAT GACACAAATG
  GCAAAAGAGC TGGGGAGAAG CGTGCCTGGC CTCTAAGAGA TCTATCAAGA CTTCTGCTTC
  K
  TCCCAGTGGC CCCTTAGAAC CACGGATGGT AGCCCCTACC CACAGAAGTC ACAGTATGCT
  GGGTAGAGCA TAGTCGCTAA GAGGGTGGGG CTTTAAAATT GATATCCCAA ATTGTTGGTT
  TTTTTCCTAT TGCTGTGGAT TAGGAATTTT GAGGTAGGTG GGGTAAGGAG GGGCTGATAT
  TTGGGATGTA AAGTGAATTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss37520620	NES08876697	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	G		T	T	G
ss148209684	ENSMUSSNP716338	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs28246894					SNP	G	G	T	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520620	NES08876697	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163553049 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	46 bp distal
Rr569474	regulatory region 569474	1248 bp proximal