rs28246893 SNP Detail

Summary

• ID
  rs28246893
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163553168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTAGAAA TGACACAAAT
  GGCAAAAGAG CTGGGGAGAA GCGTGCCTGG CCTCTAAGAG ATCTATCAAG ACTTCTGCTT
  CTTCCCAGTG GCCCCTTAGA ACCACGGATG GTAGCCCCTA CCCACAGAAG TCACAGTATG
  CTGGGTAGAG CATAGTCGCT AAGAGGGTGG GGCTTTAAAA TTGATATCCC AAATTGTTGG
  K
  TTTTTTCCTA TTGCTGTGGA TTAGGAATTT TGAGGTAGGT GGGGTAAGGA GGGGCTGATA
  TTTGGGATGT AAAGTGAATT GAATAAATTA AAAATTTTTG AGGCAAATTC ATAGACTCAA
  CCAAACATCA GCGAAAAGAC TGAAGAATTT GATCTCCAGC ACAAAATCCA ATGAAGAGGA
  TTAGCACGAG GGAGGCTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss37520619	NES08876698	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	G		T	T	T
ss148209693	ENSMUSSNP398869	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs28246893					SNP	G	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520619	NES08876698	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163553168 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	165 bp distal
Rr569474	regulatory region 569474	1129 bp proximal