rs28246892 SNP Detail

Summary

• ID
  rs28246892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163553473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCATAG ACTCAACCAA
  ACATCAGCGA AAAGACTGAA GAATTTGATC TCCAGCACAA AATCCAATGA AGAGGATTAG
  CACGAGGGAG GCTGAGGCAG GAGAATCAGA GGTTTGAGGC CAGCCTGGGA TACATTATGA
  GACTTTGACT CGAAACCAGA AACTACAAGT GAGAAAATTC AGCAGAGAAC TTTGCTTAAG
  Y
  GTGGTGAGTG CATCTGGTGT TTGTGTTGGC GAGCACAGTA GAATATTTTC ATGCGCCTTC
  CCTGTTTCCT GCTCTACTTT TTGAAATTCT TTCTTTGAGG CTAAGACTGG GGTGGCTGGG
  TGGGCAGGGG ACCAAAAAAA AAGGACAAAG GAAAGAGACT CTTCAAAAAC TCTTATTAGA
  CACTAGTGCC CATTGTAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss37520618	NES08876678	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs28246892					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520618	NES08876678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163553473 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pkig	protein kinase inhibitor, gamma			Intron
				mRNA-UTR
Rr569473	regulatory region 569473			470 bp distal
Rr569474	regulatory region 569474			824 bp proximal
Rr569475	regulatory region 569475			1899 bp proximal