rs28244798 SNP Detail

Summary

• ID
  rs28244798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164229412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAAGTCTT CTATCTGGCC
  CCTCTGCTTA CTCACGGTGT GCTCTCAGAC AAGAACCTGT GGCCCCTAGG AAGGACTCTC
  CTTAACTTTA AACTTGAGGG ATTGGGCAAG GTGAGCTCTC ATGCCAGCCA CTACCCTGGC
  CTGCTTACTT TATCTGATCA TGATATCTAA GTAAGGTCCT GATCATCTCA GCTCCTGTTC
  Y
  CAGCCGCTCC TGACCCACAT GACCAATCAC AGAAAGTATT GCCATATCAT TTAAGGTTTT
  GCTCAAAGCT CCCCACCCCC CCCTTTTTTT CTTGCCTGCA CTATCCTTCA TCAGACATTC
  CCCTTTTCTA TACAGTTGCA CACAGGTGGA CCTCACTCCC TATCCAGCCT TAGCAGTACA
  GACATCAGCC AGCCTAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37517620	NES08866953	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	C		C	C	C	T	C
ss45212280	mCV22940872	ABI	CRAMUS_MOUSE	f	SNP		C	T					C	C
ss148224318	ENSMUSSNP6501858	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs28244798					SNP	C	C	T	C	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517620	NES08866953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164229412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12651	CpG island 12651			1760 bp proximal
Matn4	matrilin 4			1901 bp downstream
Rr569592	regulatory region 569592			159 bp distal
Rr569593	regulatory region 569593			341 bp distal
Rr569594	regulatory region 569594			1473 bp proximal
Slpi	secretory leukocyte peptidase inhibitor			Intron
				Noncoding-Transcript-Variant