rs28244797 SNP Detail

Summary

• ID
  rs28244797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164229551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAT TCCCCTTTTC TATACAGTTG
  Y
  ACACAGGTGG ACCTCACTCC CTATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37517619	NES08866956	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T		C	T	T		T
ss45342382	mCV22940881	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C	T
ss148224324	ENSMUSSNP7090568	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						T
ss320605743	CHEV_2_164213367	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28244797					SNP	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517619	NES08866956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164229551 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Matn4	matrilin 4			1762 bp downstream
Rr569592	regulatory region 569592			298 bp distal
Rr569593	regulatory region 569593			480 bp distal
Rr569594	regulatory region 569594			1334 bp proximal
Rr569595	regulatory region 569595			1947 bp proximal
Slpi	secretory leukocyte peptidase inhibitor			Intron
				Noncoding-Transcript-Variant