rs28244757 SNP Detail

Summary

• ID
  rs28244757
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164247896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCGGTAGGT GGCTCCCTAC CCCGACCCAG GTCTCCACAG
  CCTTCAGCCC TATGCCTCCC TCCAAACCCA CCACCATTTA GCTTCTTTGA CATCTTGGAG
  K
  CCTCAAGGCT GACACCTCAG CCATTGTTCA GCCAGGGTCC TGTTCCCCAG CCAACAACAG
  CTGCCTACTG GGATCTAGAG CAGAACTTGA CAGTGGCTGT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37517579	NES08866265	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs28244757					SNP	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517579	NES08866265	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164247896 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12657	CpG island 12657			978 bp distal
Cpgi12658	CpG island 12658			1866 bp proximal
Matn4	matrilin 4			816 bp upstream
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569598	regulatory region 569598			1375 bp distal
Rr569599	regulatory region 569599			872 bp distal
Rr569600	regulatory region 569600			583 bp distal
Rr569601	regulatory region 569601			1700 bp proximal
Rr569602	regulatory region 569602			1922 bp proximal
Tssr21579	transcription start site region 21579			1576 bp downstream
Tssr21580	transcription start site region 21580			679 bp downstream
Tssr27451	transcription start site region 27451			1355 bp upstream
Tssr27452	transcription start site region 27452			1152 bp upstream
Tssr27453	transcription start site region 27453			1119 bp upstream