rs28244754 SNP Detail

Summary

• ID
  rs28244754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164249990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCAGAC GGTTGCAGGC
  GCAGTCTCGC TGCGCCCTCT GGCGGCAAGA ACTAAGTTTG ACCCGCACCT GAGCTTCCCC
  CAGACTTCCA GGGTTTAATT CCCGTCCTTT TTCAGCCCTC CAATCTGCGG AGACCGGGCC
  CACCGTCTGC GGTTACATGG GACTGGACGG TGCGTCCGGC AGCGCTCCCG AGACCCAGAA
  R
  TTGAACTTTG AAGAGCAGCC GGACTCCAGG GTGAGGCTGC ACTAGAGAGC ATCAGATTCC
  TGCTCCTGGC GTTGCCTCTT TTTTTTTTCT TTTTGTAGAG GAGGCAAAAC TGTAGACTCC
  CCAAGTCCCC TCCAGAAGCC AAAAGGCAAC TGGGGAGGCC AGAGGGTGGG TTCTGACCTA
  GTCCCTAGAT TAGTACGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37517576	NES08866201	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs28244754					SNP	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517576	NES08866201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164249990 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12658	CpG island 12658			within coordinates
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr569601	regulatory region 569601			373 bp distal
Rr569602	regulatory region 569602			151 bp distal