rs28244753 SNP Detail

Summary

• ID
  rs28244753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164250283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGAGGA GGCAAAACTG
  TAGACTCCCC AAGTCCCCTC CAGAAGCCAA AAGGCAACTG GGGAGGCCAG AGGGTGGGTT
  CTGACCTAGT CCCTAGATTA GTACGGTTTC TTGTCCTAAT GGTAAGGATG TCATAACTGC
  GGAAGGTTGG CTCTTCCGCT GGCAAAGTTG AGATAAGGCC TGCCGCATCC CCTTGAGCCC
  Y
  GTAGGAATTT GGTTGTGCCA AGACCCTGTA CATCTCGGAC GCCGATAAGA GGAAGCACTT
  CCGGCTGGTG CTGCGACTGG TGCTGCGAGG GGGCCAGGAG CTGGGCACTT TCCACAGTCG
  CCTCATCAAG GTGATCTCCA AGCCCTCGCA GAAGAAGCAG TCGCTGAAAA ACACAGACCG
  TGAGAGGGGC GAGGTGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37517575	NES08866202	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs28244753					SNP	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517575	NES08866202	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164250283 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr569601	regulatory region 569601			666 bp distal
Rr569602	regulatory region 569602			444 bp distal