rs28244752 SNP Detail

Summary

• ID
  rs28244752
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164250320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGAAGC CAAAAGGCAA
  CTGGGGAGGC CAGAGGGTGG GTTCTGACCT AGTCCCTAGA TTAGTACGGT TTCTTGTCCT
  AATGGTAAGG ATGTCATAAC TGCGGAAGGT TGGCTCTTCC GCTGGCAAAG TTGAGATAAG
  GCCTGCCGCA TCCCCTTGAG CCCCGTAGGA ATTTGGTTGT GCCAAGACCC TGTACATCTC
  S
  GACGCCGATA AGAGGAAGCA CTTCCGGCTG GTGCTGCGAC TGGTGCTGCG AGGGGGCCAG
  GAGCTGGGCA CTTTCCACAG TCGCCTCATC AAGGTGATCT CCAAGCCCTC GCAGAAGAAG
  CAGTCGCTGA AAAACACAGA CCGTGAGAGG GGCGAGGTGG AAGGGTGCAA TTCGAACCCA
  GAGCTGCAAA AATGGGCGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37517574	NES08866203	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs28244752					SNP	G	G	G	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517574	NES08866203	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164250320 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12658	CpG island 12658			79 bp distal
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr569601	regulatory region 569601			703 bp distal
Rr569602	regulatory region 569602			481 bp distal