rs28236084 SNP Detail

Summary

• ID
  rs28236084
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133221908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTGGAA GTGTCAGAAT
  CCACCCTGAC CATCACAGAT ATATGCAATT ATTATAAACT TTATAAATCT GTGCCTTCCA
  CAGGTGGGTC CAACCTGGAA TCTTAGGTCT TTTACTTCTC CTCCCCAAAC ATGCTCTGAC
  CAACAAACAG GATCTTAAGG GAGAAAGGAC CCATGTACTA ATTGTCTGCT TCGTCTTCAG
  W
  GGATGAGAAG GCCACTCACT CTCTCACAGG ATTCCATTCA GGTTTCCTCA TTTAGCTCTG
  GAGTGTGGGA CAGAATCCCC GGGAGAATAA ACAGCAATTG TAGACTATGT TTAAAGGGAC
  ACATACCATA AAAATGTAGA AACGCAACAG AGCTCTTAAG TTTGTAAGTG TAAATGTGGG
  TGGGCTTAAC ATGAGGCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461607	NES08973569	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28236084					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461607	NES08973569	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133221908 () rs orientation: forward

Symbol	Name	Function Class
Rr565593	regulatory region 565593	1128 bp proximal
Rr565594	regulatory region 565594	1213 bp proximal