rs28236079 SNP Detail

Summary

• ID
  rs28236079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133222218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAGGGA CACATACCAT
  AAAAATGTAG AAACGCAACA GAGCTCTTAA GTTTGTAAGT GTAAATGTGG GTGGGCTTAA
  CATGAGGCTG ACATTTTAGG GAAGTCTGGA GGGTGAATTG TGTTTCCCTG TGATCATCTA
  GCTAAAGAAT TATCCAGAAA GGCATAGCCA ACGTGAAAGT CCTATTGTGA GGGCTGGTCT
  Y
  GTTAGAAATC GAAGAAGTGG AAGGTTAATG TACCAAGAAA TGAGTAAAAA TCAGGCAAAG
  GACAGGGTCT GAGATTGCTA GGTATCCCCC AAGTAAACAC AGGGGAGCAG GGTAAGAGAG
  TGGTGCTATG GTCCAGGCAT GGAGATGAAG ATGGCTCCAG CGAGTTCAGT AGTGTGCTGG
  AGGATGAAAA GGTCAGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461602	NES08973574	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28236079					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461602	NES08973574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133222218 () rs orientation: forward

Symbol	Name	Function Class
Rr565593	regulatory region 565593	818 bp proximal
Rr565594	regulatory region 565594	903 bp proximal