rs28236075 SNP Detail

Summary

• ID
  rs28236075
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133222611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAGCTA CTCTTGTATC
  AAACATTCAT GCAATGGAGT TTTCTGGCTT CTTTCATTTG GTGAGAGTGC AGCCATTCTG
  GCATTAGTCC AATCCACTAG TACTAATCAA AGAACAAAAA ATCTGTGGAG ATGGACAGAT
  CTTCCAGTGA CTGCTCTTGA AGAGAGTTTT GTGTACACAG TTCTTCATAT CTTGCCTTGT
  M
  CTCCCAACTC CGACTTTCTG GGTGCCATCC CTTTTCCATG TGACTCACCC ATTTGTCATT
  CTGACACCAG GGTCCACGTT CTCATTTATC CCTTCAATAT CTCTGAGGCA AATTGGAATG
  TTGCGTAAAT ACATCCTATA GATCAGCCAA TGCATAGATT CCCAAGTAAC TAAGCAATAT
  GCATTCAGAA GTCTCTGCGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461598	NES08973578	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C		C	C	C	C	C	C	C	C	A
ss45217093	mCV23923095	ABI	CRAMUS_MOUSE	f	SNP		A	C				C		C
ss147626240	ENSMUSSNP1226659	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28236075					SNP	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461598	NES08973578	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133222611 () rs orientation: forward

Symbol	Name	Function Class
Rr565593	regulatory region 565593	425 bp proximal
Rr565594	regulatory region 565594	510 bp proximal