rs28236074 SNP Detail

Summary

• ID
  rs28236074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133222674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGCAGC CATTCTGGCA
  TTAGTCCAAT CCACTAGTAC TAATCAAAGA ACAAAAAATC TGTGGAGATG GACAGATCTT
  CCAGTGACTG CTCTTGAAGA GAGTTTTGTG TACACAGTTC TTCATATCTT GCCTTGTCCT
  CCCAACTCCG ACTTTCTGGG TGCCATCCCT TTTCCATGTG ACTCACCCAT TTGTCATTCT
  R
  ACACCAGGGT CCACGTTCTC ATTTATCCCT TCAATATCTC TGAGGCAAAT TGGAATGTTG
  CGTAAATACA TCCTATAGAT CAGCCAATGC ATAGATTCCC AAGTAACTAA GCAATATGCA
  TTCAGAAGTC TCTGCGTTTG GCTCTTATGC AGAAATGTAA TATAAAACAA TTCACTAAGA
  ATTGGGCAAA TGGTAAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461597	NES08973579	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28236074					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461597	NES08973579	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133222674 () rs orientation: forward

Symbol	Name	Function Class
Rr565593	regulatory region 565593	362 bp proximal
Rr565594	regulatory region 565594	447 bp proximal