rs28236071 SNP Detail

Summary

• ID
  rs28236071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133222811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCAACT CCGACTTTCT
  GGGTGCCATC CCTTTTCCAT GTGACTCACC CATTTGTCAT TCTGACACCA GGGTCCACGT
  TCTCATTTAT CCCTTCAATA TCTCTGAGGC AAATTGGAAT GTTGCGTAAA TACATCCTAT
  AGATCAGCCA ATGCATAGAT TCCCAAGTAA CTAAGCAATA TGCATTCAGA AGTCTCTGCG
  Y
  TTGGCTCTTA TGCAGAAATG TAATATAAAA CAATTCACTA AGAATTGGGC AAATGGTAAG
  CTGGTGTTGC ACAGCAAGCA CACTGATGTC TCCTGGGTTT CTGCTTCTTG CCTTGAAATG
  GAGACTAGAA TCAGAGAGCA GGCGAAGGAG TATTTACATT TACCCATAAC ACCCTATGCT
  TCTGCTACAC CACCGCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461594	NES08973582	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28236071					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461594	NES08973582	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133222811 () rs orientation: forward

Symbol	Name	Function Class
Rr565593	regulatory region 565593	225 bp proximal
Rr565594	regulatory region 565594	310 bp proximal
Rr565595	regulatory region 565595	1949 bp proximal