rs28236064 SNP Detail

Summary

• ID
  rs28236064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133223379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGGGCC CAGCAGCTCT
  CCCTACAAAC CTTGTGTTAG TTTTGCAGTC CGGGTGGTCA TGAAAGGAGG AAAGAAATGC
  TTGGCAGTGC CAAGGCGCAT GTCTTTTTTG CTCAAGCATG GTCATCCAGT TCTCTTGAAC
  TTTTGGATTA CAGATAAAAA TAACCACCAT CCATAGTGAA AGGATACCCA GGTCACATGA
  Y
  CCTTCAGCCC TGGGCATGGC GTTAACTCCA GTCTCCTTTT TGCCTTGGAC CTAGAGCCCA
  GAAGTTGTAA CAGGACAACT AGCTTCGGGC TTCTGTTGTG ACAAGAGGCA GGAAGGCAAG
  TTGTCACAGC AAGAGCTGTA GGTGGCTTGG TTGTGGCAGT TGCTCAATCA GTGGCACAGT
  GACTCTTGGC ACATTTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461587	NES08973590	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28236064					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461587	NES08973590	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133223379 () rs orientation: forward

Symbol	Name	Function Class
Rr565593	regulatory region 565593	139 bp distal
Rr565594	regulatory region 565594	237 bp distal
Rr565595	regulatory region 565595	1381 bp proximal