rs28235882 SNP Detail

Summary

• ID
  rs28235882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133265705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACAAAA ACAAAACAAA
  ACAAAACAAA ACAACAGCAA CAACAAACTG GCTGCTAGAT GTCACTTGTG TAAGTCCTCT
  GTAGCCCTGC ACCATATGAT GCATTTATCA TTTATCAGTG TTGAGTTCAG GGATCATAAA
  TTAGTTTTAA AACAGAAACT TTAATGTAAG GATCAGTCTT AGAGATAAAA CTATGGGAAA
  Y
  CTAACAGAAT GGTACAATGG GTAGCCCTGA GACTTGCAAC ATTGGAATCT TTTAGCATAA
  GTACTAGAGA AACAGGAGTA AGAGGATTTC ACTAGTGCCT AAGTACTGGG ATCAGTTGAT
  GCAAAACAGA ACCCTTGCAG GATACAGAGA AAAAGCTTGA CCCACCAAGA AAATATAGAC
  ATGGACAAGG ATAGTGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461401	NES08987295	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28235882					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461401	NES08987295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133265705 () rs orientation: forward

Symbol	Name	Function Class
Rr565599	regulatory region 565599	1519 bp proximal
Rr565600	regulatory region 565600	1576 bp proximal