rs28235880 SNP Detail

Summary

• ID
  rs28235880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133265898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAAATCT AACAGAATGG
  TACAATGGGT AGCCCTGAGA CTTGCAACAT TGGAATCTTT TAGCATAAGT ACTAGAGAAA
  CAGGAGTAAG AGGATTTCAC TAGTGCCTAA GTACTGGGAT CAGTTGATGC AAAACAGAAC
  CCTTGCAGGA TACAGAGAAA AAGCTTGACC CACCAAGAAA ATATAGACAT GGACAAGGAT
  R
  GTGCCTGTGG TAGAGAAGGG GGCAGAGGGA GAGGTGAAAC ATTCTGGTTG TCTATCTTCC
  AAGTTCCAGA ATCTCCATAA TGCCTCCCAT TAACTAAATC CACTCACAAG CCAACTTATG
  TGGATTTCTA GAAAATTCAC CCAAATGACA TCAACTCCCT CCTTCTAAGC TGAGAAGCAG
  ATCAAGGGAA ACAAAAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461399	NES08987297	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28235880					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461399	NES08987297	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133265898 () rs orientation: forward

Symbol	Name	Function Class
Gm31851	predicted gene, 31851	1998 bp downstream
Rr565599	regulatory region 565599	1326 bp proximal
Rr565600	regulatory region 565600	1383 bp proximal