rs28235873 SNP Detail

Summary

• ID
  rs28235873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133268174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCCCCTT ATTGTTCCAC
  AAGGATCCCA TGAGTCTGGG TCTAGGGTGT TGGTCTAGTT TGTCCTTCAG TGTTAAGGCA
  CAATTTATTA ATCAGTTGCA GACTCTCCCC TCCAATCCCT ACCTCTGCTG TACCATTCCC
  CACCCATAAT TCTGTGTTTA TAGTATGTGA GAGTACATGG GTACTGATGC TCACAGAATA
  Y
  ATATGCAAAT GGATAGCAAA GATTGTGTAA CGGTATTGTC TTCACCTTTG TCATCCGTGG
  GTCCATTGAG CTTCTCTCAT AGCCAGTAGA CCCCTTGCCT TCTATGCTTT CTCCTGTGTA
  GTACTTCCAT TTGTTTCCTT GATGTCCTTA TAATTCAAGC TTTCTTGCCA ATACTAACCC
  ACAGATGGAG AGTAGATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461392	NES08987260	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28235873					SNP	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461392	NES08987260	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133268174 () rs orientation: forward

Symbol	Name	Function Class
Gm31851	predicted gene, 31851	within coordinates
Rr565599	regulatory region 565599	316 bp distal
Rr565600	regulatory region 565600	869 bp distal
Rr565601	regulatory region 565601	877 bp proximal