rs28235871 SNP Detail

Summary

• ID
  rs28235871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133268596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCATTG TTTATGACTT
  ATTGATGTCC TCAAAGTATG TGGTCTTTCC TTCCTTCAAC ATGGTGGAAC TTTCTTGGGT
  TGATTCTGTT TGCAATTCGG GAGTTGTTGT TCCATTATGC ACACTTACTG CTGTTATCAA
  TTTTTTCAGT GTTCTCTTTC TTCTTACTGA GTTTGAGATT GTCTGAGAGT GTCCTCCGTC
  R
  GCACAGAGCA CTGTAGTCGG TTGGCTATCA AAACACTCAG AACTTGATTG ACAACTTGAG
  AGGGAGGAGT TAGTCCCAGT AAAAGGGTTC TAGGGCCCCT CTGCTGTTTC CTAGCACTGA
  CCACCCAAGT CCTGCTTTTG CATTAGGAAA TGCAACACAG GGAGCAGCCT TGGCTTCTTT
  GATAGGGAAC CACTAAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37461390	NES08987262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28235871					SNP	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461390	NES08987262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133268596 () rs orientation: forward

Symbol	Name	Function Class
Gm31851	predicted gene, 31851	within coordinates
Rr565599	regulatory region 565599	738 bp distal
Rr565600	regulatory region 565600	1291 bp distal
Rr565601	regulatory region 565601	455 bp proximal