rs28235870 SNP Detail

Summary

• ID
  rs28235870
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133268671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTGATT CTGTTTGCAA
  TTCGGGAGTT GTTGTTCCAT TATGCACACT TACTGCTGTT ATCAATTTTT TCAGTGTTCT
  CTTTCTTCTT ACTGAGTTTG AGATTGTCTG AGAGTGTCCT CCGTCGGCAC AGAGCACTGT
  AGTCGGTTGG CTATCAAAAC ACTCAGAACT TGATTGACAA CTTGAGAGGG AGGAGTTAGT
  S
  CCAGTAAAAG GGTTCTAGGG CCCCTCTGCT GTTTCCTAGC ACTGACCACC CAAGTCCTGC
  TTTTGCATTA GGAAATGCAA CACAGGGAGC AGCCTTGGCT TCTTTGATAG GGAACCACTA
  AGATCATGTA TTTGCTCCCG TTTCTGTCAT TGTATCTGGT CCGTTCCACC CAGGCAGTCC
  TTTGGCCTCC TTTCTGCACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461389	NES08987263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28235870					SNP	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461389	NES08987263	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133268671 () rs orientation: forward

Symbol	Name	Function Class
Gm31851	predicted gene, 31851	within coordinates
Rr565599	regulatory region 565599	813 bp distal
Rr565600	regulatory region 565600	1366 bp distal
Rr565601	regulatory region 565601	380 bp proximal