rs28235869 SNP Detail

Summary

• ID
  rs28235869
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133268799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGCACT GTAGTCGGTT
  GGCTATCAAA ACACTCAGAA CTTGATTGAC AACTTGAGAG GGAGGAGTTA GTCCCAGTAA
  AAGGGTTCTA GGGCCCCTCT GCTGTTTCCT AGCACTGACC ACCCAAGTCC TGCTTTTGCA
  TTAGGAAATG CAACACAGGG AGCAGCCTTG GCTTCTTTGA TAGGGAACCA CTAAGATCAT
  K
  TATTTGCTCC CGTTTCTGTC ATTGTATCTG GTCCGTTCCA CCCAGGCAGT CCTTTGGCCT
  CCTTTCTGCA CATTGTAAGT TAACTTTCAT TCTTGCCTAA ATACATTACA GCAGTAACAG
  AGGAAGCCCC TTTGCACAAC CTTGTTTCTG GTTTAGCTCT GTGCATGGGG AAGCCACTTT
  CTAGGGCCAA GCAGCAAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37461388	NES08987264	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28235869					SNP	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37461388	NES08987264	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133268799 () rs orientation: forward

Symbol	Name	Function Class
Gm31851	predicted gene, 31851	within coordinates
Rr565599	regulatory region 565599	941 bp distal
Rr565600	regulatory region 565600	1494 bp distal
Rr565601	regulatory region 565601	252 bp proximal