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rs28230191 SNP Detail
Summary
  • ID
    rs28230191
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:100138774 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGGGAAAAC CTAAATCAAT
    GTGATATAAT TTAGCACAAC ACTACAGCTG TTTGAACATG TCTATCTGCA AATAAGAACT
    CCAAAATTCT AAACTTTCTG ACCCCTGACA TGACTCCATG TGTGGAAAGC CTCACTCTTG
    AACTCACAGG ACATGTCGTG TAATGCAGGT GCTCCAAAGA TATTATATGA AGTGGCCTCC
    R
    GGCTGTGTGT TTAAGATTAC ACATGGAACA AACAAATTCC CTGTTTTCTC CTGTATCTCA
    TCCCCTGGGT GAGTCTGTAT ATGCTAGTAG TGCTTTGTAC TGTCTTAAGA AATCTGCAAT
    ATTAAACCTA ATTTCCTAAC CTCCATGATA GTGAAATCTA CCACCATCTT TCGTTCACTT
    GCTCTAATGG AGGCAGAGCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38317335 NES09529430 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28230191 SNP A A A A A A A A A A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38317335 NES09529430 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:100138774 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ror1 receptor tyrosine kinase-like orphan receptor 1 Intron
Rr595970 regulatory region 595970 1617 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory