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rs28230188 SNP Detail
Summary
  • ID
    rs28230188
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:100139468 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGTGGAGGC TAAGAAGCAC
    AAGGTCATAA GCAGGGTCCC AATATCCCCT TCAAGGCCCT ACCCCTGATG ACATCACTCT
    GTTTCACTAG GTTCCACTTC TTAAATGTTC CCACAATAGT GTCACAGCCT GGTGAGCAAA
    CATATAGCAT GGGCCCTCAT GAACAACATC CTGATTGGTG CCTTCCTCTA TCTGCTCTTC
    Y
    TACATATGCT TTACCACAAT TCAGATGTCC TCTGTGTCCT GGGTTGGACT GGGGTGAAAG
    TTCAGAGAAG GTTGAATTTT CCCAGAAAAG GCTAAGGAAC ATCTCCTTAT GTCTGCCATG
    GCTGCCATGG CTGACCTGTC CTGAAGGTGA GGCTTTCTTG GAGTTGTCAT CTCTCCTTGC
    TTAGAGAGGG ATCCCAGGCC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38317332 NES09529327 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28230188 SNP T T T T T T T T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38317332 NES09529327 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:100139468 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ror1 receptor tyrosine kinase-like orphan receptor 1 Intron
Rr595970 regulatory region 595970 923 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory