rs28230188 SNP Detail

Summary

• ID
  rs28230188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100139468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGAGGC TAAGAAGCAC
  AAGGTCATAA GCAGGGTCCC AATATCCCCT TCAAGGCCCT ACCCCTGATG ACATCACTCT
  GTTTCACTAG GTTCCACTTC TTAAATGTTC CCACAATAGT GTCACAGCCT GGTGAGCAAA
  CATATAGCAT GGGCCCTCAT GAACAACATC CTGATTGGTG CCTTCCTCTA TCTGCTCTTC
  Y
  TACATATGCT TTACCACAAT TCAGATGTCC TCTGTGTCCT GGGTTGGACT GGGGTGAAAG
  TTCAGAGAAG GTTGAATTTT CCCAGAAAAG GCTAAGGAAC ATCTCCTTAT GTCTGCCATG
  GCTGCCATGG CTGACCTGTC CTGAAGGTGA GGCTTTCTTG GAGTTGTCAT CTCTCCTTGC
  TTAGAGAGGG ATCCCAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38317332	NES09529327	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28230188					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38317332	NES09529327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100139468 () rs orientation: forward

Symbol	Name	Function Class
Ror1	receptor tyrosine kinase-like orphan receptor 1	Intron
Rr595970	regulatory region 595970	923 bp proximal