rs28228870 SNP Detail

Summary

• ID
  rs28228870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:79408433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATATATGT ATGTATATAT ATATATATAT ATTTCATAAT
  CAGCAAATTC AGTAGATCTA GTCCCAAGGG GACCTCACAC CTCTGGTCTG TATGGCATCA
  Y
  ACTCGTGTAC ACACACTCAC ACATGAACAC ATACACAGAA TGAAAGTTAA AAATACAATC
  TAAAAGAAAA AACAAAAACC AAGAAAATCC TAAAGTGATT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151199	NES08470474	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228870					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151199	NES08470474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79408433 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	Intron
Evi2b	ecotropic viral integration site 2b	Intron
Nf1	neurofibromin 1	Intron
Rr452267	regulatory region 452267	1943 bp proximal
Tssr109487	transcription start site region 109487	1828 bp upstream
Tssr109488	transcription start site region 109488	1639 bp upstream
Tssr109489	transcription start site region 109489	1335 bp upstream
Tssr109490	transcription start site region 109490	1278 bp upstream
Tssr109491	transcription start site region 109491	1244 bp upstream
Tssr109492	transcription start site region 109492	1195 bp upstream
Tssr109493	transcription start site region 109493	1177 bp upstream
Tssr109494	transcription start site region 109494	1160 bp upstream
Tssr109495	transcription start site region 109495	1124 bp upstream
Tssr109496	transcription start site region 109496	1103 bp upstream
Tssr109497	transcription start site region 109497	1052 bp upstream
Tssr109498	transcription start site region 109498	1010 bp upstream
Tssr109499	transcription start site region 109499	974 bp upstream
Tssr109500	transcription start site region 109500	943 bp upstream
Tssr109501	transcription start site region 109501	903 bp upstream
Tssr109502	transcription start site region 109502	879 bp upstream
Tssr109503	transcription start site region 109503	802 bp upstream
Tssr109504	transcription start site region 109504	1064 bp downstream
Tssr109505	transcription start site region 109505	1223 bp downstream
Tssr109506	transcription start site region 109506	1746 bp downstream