rs28218120 SNP Detail

Summary

• ID
  rs28218120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100383724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGCAGA TTTCACAAGC
  CTACTGCCTC TTCTTCCCAT GGAATCATTA TAAAAAATGC TCCAAGAGTC TTCCTTCAAA
  AAGAGCCAGC ACCTAGTTTA CAAACGTAAA CGGAGCCCTG ACAGACTCTG CTGGCCTCGT
  TGTCTTCTGA TAGTGCAGCT GGATGAGGGC CAACCCCCTC TTTTTTTAAT GGCCTAATTT
  Y
  CTGGCAGTAA TGGAGATAAA GCTTTCAGAT TGTAGAATGC TTCTTCAATG ACTCAGAATA
  CAAATACTCA GGAAACCTCT TTTAACTTCA TCTATACACT TTTGTTTTTT ATCGATGCTG
  AGATTATTAA AATCTCGTGC AGCTTTTCTA AGAGCTTTGC GTTTTATGGA TAGGAGGTTG
  CTGAATTTTG ATTTAGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38316253	NES09548902	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28218120					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38316253	NES09548902	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100383724 () rs orientation: forward

Symbol	Name	Function Class
Rr596000	regulatory region 596000	1437 bp distal
Rr596001	regulatory region 596001	723 bp proximal
Rr596002	regulatory region 596002	1176 bp proximal
Rr596003	regulatory region 596003	1295 bp proximal
Ube2u	ubiquitin-conjugating enzyme E2U (putative)	Intron
Ube2uos	ubiquitin-conjugating enzyme E2U (putative), opposite strand	within coordinates