rs28218112 SNP Detail

Summary

• ID
  rs28218112
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100385248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTAAAG ATTCCGACAC
  AAAGGGCACA CCCAAACCAA CTCCATCAGA GCTGGCAGTA GGACTGGGTA GTGGTAGTTT
  TTGAAGGCTC CCCTGGTGAT CATAACTGTG CAGCCACAGC TGGGATCACC ATGATGTCAG
  AAGTTAGCGG CTCCTTAGCC CCGTGCTAGT TTTGCGACAT ACAGGTAAGT AAATTGAAGG
  R
  AGTGGCTAGT GGCTTAACTA ATGGAACGCC ATCTTTCATC CCTACCAATG AGCAAAGAAT
  ATTCACCCGA CTTTTAGGTG CTCTGTGGCC GAATGAGATA GTATTGTATG CAAACAGAAC
  ACACTAGTGG AAGCTGTACC GTCTTTTCTG GATTCGACAG TCCATGCAGA GAAGATGGGC
  AACTTTTAAG TCGACTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38316245	NES09548759	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G		A	A	G		A	A	G	A
ss147112537	ENSMUSSNP5819037	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28218112					SNP	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38316245	NES09548759	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100385248 () rs orientation: forward

Symbol	Name	Function Class
Rr596001	regulatory region 596001	230 bp distal
Rr596002	regulatory region 596002	327 bp distal
Rr596003	regulatory region 596003	within coordinates
Ube2u	ubiquitin-conjugating enzyme E2U (putative)	Intron
Ube2uos	ubiquitin-conjugating enzyme E2U (putative), opposite strand	219 bp upstream