rs28213912 SNP Detail

Summary

• ID
  rs28213912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103204594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGAAAA TGAGGATTAA
  CTTGATTATT CGTTGTTGGA TTTGCATTGA GCACTGAGTC TTATGACTCA ATAAGACTAC
  AAGAGACAGA AAAGAAGTGT GTGTAAAATT CATCCAGAAC TTTACCATCG GTACTGACCG
  GTGAACCGGC ACAGTGGCAG GCAGACGATA CAGAAGATGT AGGCAAGGAC TTGCAGTTAC
  Y
  GAACCATGAA ATAACAACCC ATTTCTCCTC TGTGCTGGCA CACACTAGGT GTTACTGATA
  AGTAACAATT TCTATTGACA AATCCTGAGA ATGACTCAGC TACAAGTAAG TTTTTATATC
  ACGTTTGATC AGAGAAGAGC AGTTTTAAAT TATTGACTGG AAAAACTTGT AAAGGACAAG
  TGACTTACAG AAGAAGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305232	NES09510214	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28213912					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305232	NES09510214	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103204594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Oma1	OMA1 zinc metallopeptidase			Intron
				Noncoding-Transcript-Variant
Rr596392	regulatory region 596392			979 bp distal
Rr596393	regulatory region 596393			1068 bp distal
Rr596394	regulatory region 596394			219 bp distal
Rr596395	regulatory region 596395			1993 bp proximal
Tssr38109	transcription start site region 38109			1306 bp upstream