GAGAA TGACTCAGCT ACAAGTAAGT W TTTATATCAC GTTTGATCAG AGAAG W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38305231 | NES09510215 | PERLEGEN | MM_PANEL2 | f | SNP | T | A | T | A | T | A | A | T | T | A | T | A | T | |||
ss45689237 | mCV23031530 | ABI | CRAMUS_MOUSE | f | SNP | T | T | A | T | T | |||||||||||
ss147140883 | ENSMUSSNP6153029 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | A | T | |||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs28213911 | SNP | T | T | A | T | A | T | A | T | A | T | T | T | A | T | A | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38305231 | NES09510215 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr4:103204706 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Oma1 | OMA1 zinc metallopeptidase | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr596392 | regulatory region 596392 | 1091 bp distal | ||||||
Rr596393 | regulatory region 596393 | 1180 bp distal | ||||||
Rr596394 | regulatory region 596394 | 331 bp distal | ||||||
Rr596395 | regulatory region 596395 | 1881 bp proximal | ||||||
Tssr38109 | transcription start site region 38109 | 1194 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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