rs28213911 SNP Detail

Summary

• ID
  rs28213911
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103204706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA TGACTCAGCT ACAAGTAAGT
  W
  TTTATATCAC GTTTGATCAG AGAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305231	NES09510215	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	T	A		A		T	T	A	T	A	T
ss45689237	mCV23031530	ABI	CRAMUS_MOUSE	f	SNP	T	T	A					T		T
ss147140883	ENSMUSSNP6153029	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28213911					SNP	T	T	A	T	A	T	A	T	A	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305231	NES09510215	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103204706 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Oma1	OMA1 zinc metallopeptidase			Intron
				Noncoding-Transcript-Variant
Rr596392	regulatory region 596392			1091 bp distal
Rr596393	regulatory region 596393			1180 bp distal
Rr596394	regulatory region 596394			331 bp distal
Rr596395	regulatory region 596395			1881 bp proximal
Tssr38109	transcription start site region 38109			1194 bp upstream