rs28213909 SNP Detail

Summary

• ID
  rs28213909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103204819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCTGTG CTGGCACACA
  CTAGGTGTTA CTGATAAGTA ACAATTTCTA TTGACAAATC CTGAGAATGA CTCAGCTACA
  AGTAAGTTTT TATATCACGT TTGATCAGAG AAGAGCAGTT TTAAATTATT GACTGGAAAA
  ACTTGTAAAG GACAAGTGAC TTACAGAAGA AGAGTGACTG TAGACAGGAG ATACACTGGG
  R
  CAGGCTGAGG CTGTGTGTGC AGATGAAGGG AGCTTGCTTC CGGGAGATGC TGAGGACAGT
  GCAGGCATGC CTTCAGGACG GGGACACCTG AGCCCATGCA CGGAGAAGGA CTGCTCAGGT
  GACGCTGGCC ATGCTGTTTA CAGTTAGTCT CAGTAATGTT TATGTGTGGG TCCTGTCCTA
  AGTGGGTTAC ATGTAGTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305229	NES09510217	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28213909					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305229	NES09510217	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103204819 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Oma1	OMA1 zinc metallopeptidase			Intron
				Noncoding-Transcript-Variant
Rr596392	regulatory region 596392			1204 bp distal
Rr596393	regulatory region 596393			1293 bp distal
Rr596394	regulatory region 596394			444 bp distal
Rr596395	regulatory region 596395			1768 bp proximal
Tssr38109	transcription start site region 38109			1081 bp upstream