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rs28213909 SNP Detail
Summary
  • ID
    rs28213909
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:103204819 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCCTCTGTG CTGGCACACA
    CTAGGTGTTA CTGATAAGTA ACAATTTCTA TTGACAAATC CTGAGAATGA CTCAGCTACA
    AGTAAGTTTT TATATCACGT TTGATCAGAG AAGAGCAGTT TTAAATTATT GACTGGAAAA
    ACTTGTAAAG GACAAGTGAC TTACAGAAGA AGAGTGACTG TAGACAGGAG ATACACTGGG
    R
    CAGGCTGAGG CTGTGTGTGC AGATGAAGGG AGCTTGCTTC CGGGAGATGC TGAGGACAGT
    GCAGGCATGC CTTCAGGACG GGGACACCTG AGCCCATGCA CGGAGAAGGA CTGCTCAGGT
    GACGCTGGCC ATGCTGTTTA CAGTTAGTCT CAGTAATGTT TATGTGTGGG TCCTGTCCTA
    AGTGGGTTAC ATGTAGTAAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38305229 NES09510217 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28213909 SNP A A A A A A G A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38305229 NES09510217 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:103204819 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Oma1 OMA1 zinc metallopeptidase Intron
Noncoding-Transcript-Variant
Rr596392 regulatory region 596392 1204 bp distal
Rr596393 regulatory region 596393 1293 bp distal
Rr596394 regulatory region 596394 444 bp distal
Rr596395 regulatory region 596395 1768 bp proximal
Tssr38109 transcription start site region 38109 1081 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory