rs28213903 SNP Detail

Summary

• ID
  rs28213903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103205315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCTCAC TGATGGTGGG
  TTTCTCCCTG CTCCGAGAGG AGGTGCATTC CTGTGGGATG CGGACCTTCT TTCTTCCAAG
  CTGCTGGAAG CATCACCTCT AAAAGATGCC TGTTCTTATA CATGTTTTGT TCCCTTTAAA
  TATCATACCA TTCTTAGCGT ATTTTCCCAG CTCTTGGCCA TTCTGTAACA GTCCTTTGTA
  R
  TACTGTCAGG TTATTGACCT GCCTCTGACA CGTCTGTGTG GGATACAGAG AGGATGCTAG
  AACATCTGGT TCAGATGCAC AATGCTACTG GCCTTCAAAA AAGACTCCAT GCTAATCTCA
  GGCTTTTCCT TTTGAAGGGG TGATGGCTAA GAGTTCAGAG CCCCTTTCAG TTTGTACTTG
  GTAGTGACCA TTTTGGTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38305223	NES09510124	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28213903					SNP	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305223	NES09510124	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103205315 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Oma1	OMA1 zinc metallopeptidase			Intron
				Noncoding-Transcript-Variant
Rr596392	regulatory region 596392			1700 bp distal
Rr596393	regulatory region 596393			1789 bp distal
Rr596394	regulatory region 596394			940 bp distal
Rr596395	regulatory region 596395			1272 bp proximal
Tssr38109	transcription start site region 38109			585 bp upstream