rs28213107 SNP Detail

Summary

• ID
  rs28213107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79104038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGATAAA TTGTGGGTGC
  TGGTCAGTGA GCAGACATGG GTCAATGCTA CAAAACAAAC AAACAAACAA GACAGCAGCT
  GCTCCCGTAT GTGGTGTCCA ATCAATCCGG CAACTTGTTC TAGGAAAGGG AAAGCTCCCT
  AGGCAGCTGT CATCATGAAG GCCAAATTCC TCGGCAGAAG AGCTGAAGAG AAGATAAAGG
  R
  TGTTGGAGGT ACCTGTGCTC TGGTGGCTTG AAGCCACCCA GGGGGTTAAT TAAATGCTAA
  TATTAAAAAA AATCTCTATG GGAACACATG TTGTAAATCG TCCTGGAATT TTTTACCTCA
  TCCAACTATT GGTTGCTGTG GGGGTTTTTT TTTGTTTGTT TGTTTGTTTT TTTTTTTGAG
  ACAGGGTTTC TCTGTGTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37151730	NES08467755	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		A		G
ss323759312	CHEV_11_79026714	CHEVERUD	SCREENING_POP	f	SNP					G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs28213107					SNP	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151730	NES08467755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79104038 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	within coordinates
Gm74268	predicted gene, 74268	1381 bp downstream
Rr402771	regulatory region 402771	855 bp upstream
Rr452198	regulatory region 452198	516 bp proximal
Rr452199	regulatory region 452199	910 bp proximal