rs28213106 SNP Detail

Summary

• ID
  rs28213106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79104329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAAATCG TCCTGGAATT
  TTTTACCTCA TCCAACTATT GGTTGCTGTG GGGGTTTTTT TTTGTTTGTT TGTTTGTTTT
  TTTTTTTGAG ACAGGGTTTC TCTGTGTAGC CTTGACTATC CTGGAACTCA CTGTGTAGAT
  CAGGCTGGAC TCGAACTCAC AGAGTTCGGA CTGCCTCTGC CTGGGATTAA AGGGTTGCAC
  Y
  GCTCCTTCCT GTTCTTTAGA GTCTTCAATG AAGGGCTGGT TTCCCTTTCC TGTGTCCCCT
  TCGTTTTCCA AGTCTTTCTG GCTGCCTCAG ATACCAGGAC AAGTCTTTTG TATTCATAAT
  TCGTGGAGTG CAGGGAGGTG AGGAGTCCAA CCACGGGATC AGTGTGGCTT GAAACCTACT
  GTGTGGCCTT ATTGTTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37151729	NES08467756	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28213106					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151729	NES08467756	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79104329 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	260 bp downstream
Gm74268	predicted gene, 74268	1090 bp downstream
Rr402771	regulatory region 402771	564 bp upstream
Rr452198	regulatory region 452198	225 bp proximal
Rr452199	regulatory region 452199	619 bp proximal